If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ), 'gf_id' => 'HOM05D000817', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000817' ), 'data_identifier' => 'HOM05D000817', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000817', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02120' => 'bna', 'A01p10920' => 'bna', 'A02p19690' => 'bna', 'A02p22340' => 'bna', 'A03p47880' => 'bna', 'A03p51580' => 'bna', 'A03p64580' => 'bna', 'A06p15510' => 'bna', 'A06p29200' => 'bna', 'A07p29080' => 'bna', 'A07p40690' => 'bna', 'A07p43950' => 'bna', 'A08p14050' => 'bna', 'A08p29830' => 'bna', 'A09p59390' => 'bna', 'Aa31LG4G18890' => 'aar', 'Aa31LG4G2290' => 'aar', 'Aa31LG4G5280' => 'aar', 'Aa31LG6G13590' => 'aar', 'Aa31LG6G1570' => 'aar', 'Aa31LG7G11810' => 'aar', 'Aa31LG7G4050' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1846' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.844' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2670' => 'aag', 'Actinidia12593' => 'ach', 'Actinidia16766' => 'ach', 'Actinidia29837' => 'ach', 'Actinidia35609' => 'ach', 'Actinidia35654' => 'ach', 'Actinidia38021' => 'ach', 'Actinidia39526' => 'ach', 'Ah.02g115500' => 'amhyb', 'Ah.03g139240' => 'amhyb', 'Ah.05g169440' => 'amhyb', 'Ah.14g086920' => 'amhyb', 'AL1G31940' => 'aly', 'AL2G34970' => 'aly', 'AL2G39100' => 'aly', 'AL5G30900' => 'aly', 'AL7G14220' => 'aly', 'AL7G35290' => 'aly', 'Aqoxy1G01967' => 'aox', 'Aqoxy4G00217' => 'aox', 'Aqoxy6G01026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VIC9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56E7CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57RV2P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6EYN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7MK8W0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81AMKE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A43ZUL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CT2MPD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1N5UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5UCE5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0KCTK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I2EZUU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IS30UE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L8DRY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N7G789' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND2ZET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCTC3C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SPI7HB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGY2QD' => 'arhy', 'AT1G19350' => 'ath', 'AT1G75080' => 'ath', 'AT1G78700' => 'ath', 'AT3G50750' => 'ath', 'AT4G18890' => 'ath', 'AT4G36780' => 'ath', 'ATR0083G048' => 'atr', 'ATR0127G024' => 'atr', 'ATR0165G030' => 'atr', 'ATR0733G053' => 'atr', 'ATR0733G259' => 'atr', 'Atru.chr10.1527' => 'acertr', 'Atru.chr10.873' => 'acertr', 'Atru.chr13.536' => 'acertr', 'Atru.chr2.2045' => 'acertr', 'Atru.chr3.516' => 'acertr', 'Atru.chr8.2327' => 'acertr', 'AUR62003188' => 'cqu', 'AUR62019613' => 'cqu', 'AUR62030525' => 'cqu', 'AUR62030767' => 'cqu', 'AUR62033856' => 'cqu', 'AUR62037591' => 'cqu', 'AUR62039493' => 'cqu', 'AUR62041671' => 'cqu', 'AUR62041807' => 'cqu', 'BcaB02g06989' => 'bca', 'BcaB02g06990' => 'bca', 'BcaB02g06991' => 'bca', 'BcaB02g07176' => 'bca', 'BcaB03g12917' => 'bca', 'BcaB03g14450' => 'bca', 'BcaB03g14451' => 'bca', 'BcaB03g16028' => 'bca', 'BcaB05g24884' => 'bca', 'BcaB05g25153' => 'bca', 'BcaB07g31959' => 'bca', 'BcaC01g01522' => 'bca', 'BcaC03g15540' => 'bca', 'BcaC03g15837' => 'bca', 'BcaC06g30600' => 'bca', 'BcaC06g30602' => 'bca', 'BcaC06g33083' => 'bca', 'BcaC06g33317' => 'bca', 'BcaC07g41261' => 'bca', 'BcaC08g46939' => 'bca', 'BcaC08g46972' => 'bca', 'BcaC08g47461' => 'bca', 'BcaC09g51454' => 'bca', 'BcaNung02683' => 'bca', 'BcaNung03532' => 'bca', 'BcaNung03534' => 'bca', 'BcaNung03934' => 'bca', 'BcaNung04283' => 'bca', 'BcaNung04866' => 'bca', 'BcaNung07225' => 'bca', 'BcaNung07258' => 'bca', 'BolC1t01268H' => 'bol', 'BolC2t09260H' => 'bol', 'BolC2t09601H' => 'bol', 'BolC3t20425H' => 'bol', 'BolC3t21584H' => 'bol', 'BolC5t30480H' => 'bol', 'BolC6t38407H' => 'bol', 'BolC6t39943H' => 'bol', 'BolC6t40276H' => 'bol', 'BolC7t45107H' => 'bol', 'BolC7t45509H' => 'bol', 'BolC7t46617H' => 'bol', 'BolC8t49567H' => 'bol', 'BolC8t51824H' => 'bol', 'BraA01t00201Z' => 'bra', 'BraA01t01038Z' => 'bra', 'BraA02t07005Z' => 'bra', 'BraA02t07238Z' => 'bra', 'BraA03t13897Z' => 'bra', 'BraA03t15524Z' => 'bra', 'BraA06t24663Z' => 'bra', 'BraA07t30547Z' => 'bra', 'BraA07t31613Z' => 'bra', 'BraA07t31902Z' => 'bra', 'BraA08t33395Z' => 'bra', 'BraA08t34918Z' => 'bra', 'BraA09t41318Z' => 'bra', 'C01p02300' => 'bna', 'C01p12930' => 'bna', 'C02p32310' => 'bna', 'C02p35880' => 'bna', 'C03p81550' => 'bna', 'C03p92740' => 'bna', 'C05p17750' => 'bna', 'C06p32850' => 'bna', 'C06p49090' => 'bna', 'C06p52580' => 'bna', 'C07p45860' => 'bna', 'C07p50050' => 'bna', 'C07p61960' => 'bna', 'C08p19420' => 'bna', 'C08p42630' => 'bna', 'CAN.G1002.18' => 'can', 'CAN.G1126.22' => 'can', 'CAN.G1569.4' => 'can', 'CAN.G269.3' => 'can', 'CAN.G375.31' => 'can', 'CAN.G385.1' => 'can', 'CAN.G411.33' => 'can', 'CANSAT01G1012' => 'cansat', 'CANSAT25G1389' => 'cansat', 'CANSAT35G0801' => 'cansat', 'CANSAT35G1629' => 'cansat', 'CANSAT56G2483' => 'cansat', 'CARHR019940' => 'chi', 'CARHR068400' => 'chi', 'CARHR072230' => 'chi', 'CARHR160260' => 'chi', 'CARHR225770' => 'chi', 'CARHR245140' => 'chi', 'Carub.0001s1894' => 'cru', 'Carub.0002s2186' => 'cru', 'Carub.0002s2556' => 'cru', 'Carub.0005s1708' => 'cru', 'Carub.0007s0354' => 'cru', 'Carub.0007s2231' => 'cru', 'Ca_03942_v3' => 'car', 'Ca_03943_v3' => 'car', 'Ca_15525_v3' => 'car', 'Ca_24835_v3' => 'car', 'CBR_g4506' => 'cbr', 'Cc02_g15790' => 'ccan', 'Cc05_g10900' => 'ccan', 'Cc06_g00820' => 'ccan', 'Cc07_g09100' => 'ccan', 'Cc09_g08060' => 'ccan', 'Cc10_g03290' => 'ccan', 'CDE01G0450' => 'cde', 'CDE01G0468' => 'cde', 'CDE02G3231' => 'cde', 'CDE02G3914' => 'cde', 'CDE02G4748' => 'cde', 'CDE04G1861' => 'cde', 'CDE04G2519' => 'cde', 'CDE06G0898' => 'cde', 'CDE06G1937' => 'cde', 'CDE07G1299' => 'cde', 'CDE09G1407' => 'cde', 'CDE10G0609' => 'cde', 'CDE10G0859' => 'cde', 'CDE12G0853' => 'cde', 'Cfa000823' => 'cfa', 'Cfa004270' => 'cfa', 'Cfa018437' => 'cfa', 'Ciclev10001978m.g' => 'ccl', 'Ciclev10013546m.g' => 'ccl', 'Ciclev10015910m.g' => 'ccl', 'Ciclev10017778m.g' => 'ccl', 'Ciclev10021151m.g' => 'ccl', 'Ciclev10026102m.g' => 'ccl', 'CiPaw.01G033900' => 'cil', 'CiPaw.02G015100' => 'cil', 'CiPaw.09G115700' => 'cil', 'CiPaw.10G103300' => 'cil', 'CiPaw.11G157400' => 'cil', 'CiPaw.12G111200' => 'cil', 'CiPaw.16G054400' => 'cil', 'ClCG01G019290' => 'cla', 'ClCG03G007390' => 'cla', 'ClCG07G010170' => 'cla', 'ClCG08G015300' => 'cla', 'COL.COLO4_14463' => 'col', 'COL.COLO4_17516' => 'col', 'COL.COLO4_22135' => 'col', 'COL.COLO4_26360' => 'col', 'COL.COLO4_31213' => 'col', 'Cpa.g.c40990' => 'cpa', 'Cpa.g.c41581' => 'cpa', 'Cpa.g.sc24.41' => 'cpa', 'Cpa.g.sc3367.1' => 'cpa', 'Cpa.g.sc64.55' => 'cpa', 'Cpa.g.sc77.48' => 'cpa', 'CsaV3_1G033010' => 'csa', 'CsaV3_2G028510' => 'csa', 'CsaV3_4G008150' => 'csa', 'CsaV3_6G045980' => 'csa', 'CSS0002686' => 'camsi', 'CSS0005235' => 'camsi', 'CSS0010317' => 'camsi', 'CSS0017722' => 'camsi', 'CSS0030866' => 'camsi', 'CSS0034485' => 'camsi', 'CSS0038858' => 'camsi', 'DCAR_005165' => 'dca', 'DCAR_008773' => 'dca', 'DCAR_012749' => 'dca', 'DCAR_017224' => 'dca', 'DCAR_019509' => 'dca', 'DCAR_019605' => 'dca', 'DCAR_021029' => 'dca', 'DCAR_028882' => 'dca', 'Dinv06440' => 'din', 'Dinv12161' => 'din', 'Dinv12737' => 'din', 'Dinv15254' => 'din', 'Dinv18384' => 'din', 'Dinv26802' => 'din', 'Dinv32325' => 'din', 'Dinv36048' => 'din', 'Dinv39387' => 'din', 'Dinv39950' => 'din', 'Duzib041G0451' => 'dzi', 'Duzib093G2248' => 'dzi', 'Duzib116G0287' => 'dzi', 'Duzib147G0421' => 'dzi', 'Duzib160G0333' => 'dzi', 'Duzib187G1148' => 'dzi', 'Duzib192G0799' => 'dzi', 'Duzib213G0319' => 'dzi', 'Duzib235G0171' => 'dzi', 'ECA232G2410' => 'eca', 'ECA234G0296' => 'eca', 'ECA236G1326' => 'eca', 'ECA236G1795' => 'eca', 'ECA236G2245' => 'eca', 'ECA236G3060' => 'eca', 'ECA238G1116' => 'eca', 'ECA240G1199' => 'eca', 'ECA246G5109' => 'eca', 'EL10Ac4g08392' => 'bvu', 'EL10Ac5g12492' => 'bvu', 'EL10Ac6g14904' => 'bvu', 'EL10Ac8g19877' => 'bvu', 'Eucgr.D00428' => 'egr', 'Eucgr.F01541' => 'egr', 'Eucgr.F03236' => 'egr', 'Eucgr.H01239' => 'egr', 'FAN11G0031' => 'fan', 'FAN11G1881' => 'fan', 'FAN11G1898' => 'fan', 'FAN15G1944' => 'fan', 'FAN16G1838' => 'fan', 'FAN16G2692' => 'fan', 'FAN16G2834' => 'fan', 'FAN19G3083' => 'fan', 'FAN20G2221' => 'fan', 'FAN21G0212' => 'fan', 'FAN21G0945' => 'fan', 'FAN21G3920' => 'fan', 'FAN21G4047' => 'fan', 'FAN23G1339' => 'fan', 'FAN25G1736' => 'fan', 'FAN25G1840' => 'fan', 'FAN25G3363' => 'fan', 'FAN26G0148' => 'fan', 'FAN27G2302' => 'fan', 'FAN28G0308' => 'fan', 'FvH4_1g14040' => 'fve', 'FvH4_2g40170' => 'fve', 'FvH4_3g07150' => 'fve', 'FvH4_3g10040' => 'fve', 'FvH4_3g17990' => 'fve', 'Glyma.01G178000' => 'gma', 'Glyma.04G033800' => 'gma', 'Glyma.06G034000' => 'gma', 'Glyma.11G064300' => 'gma', 'Glyma.12G231400' => 'gma', 'Glyma.12G231500' => 'gma', 'Glyma.13G266500' => 'gma', 'Glyma.13G266600' => 'gma', 'Glyma.14G076900' => 'gma', 'Glyma.14G127400' => 'gma', 'Glyma.17G248900' => 'gma', 'Gohir.A01G052400' => 'ghi', 'Gohir.A03G116700' => 'ghi', 'Gohir.A04G095200' => 'ghi', 'Gohir.A05G196300' => 'ghi', 'Gohir.A05G260200' => 'ghi', 'Gohir.A06G199000' => 'ghi', 'Gohir.A10G033800' => 'ghi', 'Gohir.A11G287500' => 'ghi', 'Gohir.D01G041800' => 'ghi', 'Gohir.D02G094100' => 'ghi', 'Gohir.D04G135200' => 'ghi', 'Gohir.D05G199400' => 'ghi', 'Gohir.D05G262100' => 'ghi', 'Gohir.D06G206300' => 'ghi', 'Gohir.D10G034500' => 'ghi', 'Gohir.D11G305400' => 'ghi', 'Gohir.D11G305515' => 'ghi', 'Gorai.002G052400' => 'gra', 'Gorai.005G107000' => 'gra', 'Gorai.007G327000' => 'gra', 'Gorai.009G204600' => 'gra', 'Gorai.009G274000' => 'gra', 'Gorai.010G240700' => 'gra', 'Gorai.011G036300' => 'gra', 'Gorai.012G118900' => 'gra', 'GSVIVG01009656001' => 'vvi', 'GSVIVG01014154001' => 'vvi', 'GSVIVG01014158001' => 'vvi', 'GSVIVG01019020001' => 'vvi', 'GSVIVG01021270001' => 'vvi', 'GSVIVG01021627001' => 'vvi', 'HanXRQChr04g0104901' => 'han', 'HanXRQChr04g0116271' => 'han', 'HanXRQChr06g0179021' => 'han', 'HanXRQChr08g0234371' => 'han', 'HanXRQChr09g0268511' => 'han', 'HanXRQChr10g0316511' => 'han', 'HanXRQChr13g0389681' => 'han', 'HanXRQChr14g0439931' => 'han', 'HanXRQChr14g0440921' => 'han', 'HanXRQChr15g0481271' => 'han', 'HanXRQChr16g0508551' => 'han', 'HanXRQChr16g0520631' => 'han', 'HanXRQChr17g0556811' => 'han', 'Haze_05368' => 'cav', 'Haze_05810' => 'cav', 'Haze_09260' => 'cav', 'Haze_15131' => 'cav', 'Haze_17628' => 'cav', 'Hma1.2p1_0203F.1_g086640' => 'hma', 'Hma1.2p1_0652F.1_g195890' => 'hma', 'Hma1.2p1_0939F.1_g239480' => 'hma', 'HPP92_005190' => 'vpl', 'HPP92_006083' => 'vpl', 'HPP92_008727' => 'vpl', 'HPP92_008759' => 'vpl', 'HPP92_017330' => 'vpl', 'HPP92_024901' => 'vpl', 'HPP92_025921' => 'vpl', 'Hund16576' => 'sun', 'Hund26585' => 'sun', 'Lalb_Chr01g0016481' => 'lal', 'Lalb_Chr05g0212971' => 'lal', 'Lalb_Chr09g0322641' => 'lal', 'Lalb_Chr11g0062391' => 'lal', 'Lalb_Chr14g0369101' => 'lal', 'Lalb_Chr20g0109101' => 'lal', 'Lalb_Chr22g0355411' => 'lal', 'Lalb_Chr23g0266671' => 'lal', 'Lalb_Chr25g0285691' => 'lal', 'Lalb_Chr25g0285701' => 'lal', 'Lj1A1177T88' => 'lonja', 'Lj1A827T17' => 'lonja', 'Lj1g0006067' => 'lja', 'Lj2A316G70' => 'lonja', 'Lj2A447T53' => 'lonja', 'Lj2g0011259' => 'lja', 'Lj3g0010037' => 'lja', 'Lj3P947T25' => 'lonja', 'Lj4A783T76' => 'lonja', 'Lj8C147T2' => 'lonja', 'Lsat_1_v5_gn_1_18200' => 'lsa', 'Lsat_1_v5_gn_2_79760' => 'lsa', 'Lsat_1_v5_gn_4_122280' => 'lsa', 'Lsat_1_v5_gn_4_49401' => 'lsa', 'Lsat_1_v5_gn_5_29981' => 'lsa', 'Lsat_1_v5_gn_7_102101' => 'lsa', 'Lsat_1_v5_gn_7_25281' => 'lsa', 'Lsat_1_v5_gn_8_103401' => 'lsa', 'Lsat_1_v5_gn_9_100541' => 'lsa', 'Manes.03G091500' => 'mes', 'Manes.05G163000' => 'mes', 'Manes.08G096400' => 'mes', 'Manes.09G111051' => 'mes', 'Manes.13G136500' => 'mes', 'Manes.14G122700' => 'mes', 'Manes.15G097200' => 'mes', 'Manes.16G043500' => 'mes', 'Manes.17G060800' => 'mes', 'Manes.18G029600' => 'mes', 'Mapoly0013s0054' => 'mpo', 'Mapoly0019s0096' => 'mpo', 'Mapoly0072s0031' => 'mpo', 'MBI04_g43144_MAGBIO' => 'mbi', 'MBI06_g16573_MAGBIO' => 'mbi', 'MBI07_g00468_MAGBIO' => 'mbi', 'MBI16_g43110_MAGBIO' => 'mbi', 'MBI18_g10578_MAGBIO' => 'mbi', 'MD00G1007700' => 'mdo', 'MD03G1246200' => 'mdo', 'MD08G1035400' => 'mdo', 'MD10G1274200' => 'mdo', 'MD11G1267200' => 'mdo', 'MD15G1031900' => 'mdo', 'MD15G1267600' => 'mdo', 'MD15G1267800' => 'mdo', 'Medtr1g021990' => 'mtr', 'Medtr2g075390' => 'mtr', 'Medtr2g075400' => 'mtr', 'Medtr2g075410' => 'mtr', 'Medtr3g111680' => 'mtr', 'Medtr5g019550' => 'mtr', 'MELO3C002681.2' => 'cme', 'MELO3C007804.2' => 'cme', 'MELO3C010925.2' => 'cme', 'MELO3C016121.2' => 'cme', 'Migut.C00690' => 'egut', 'Migut.H00192' => 'egut', 'Migut.J00102' => 'egut', 'Migut.M00715' => 'egut', 'Migut.M00997' => 'egut', 'Migut.M01888' => 'egut', 'Migut.N00514' => 'egut', 'MSTRG.1296' => 'ama', 'MSTRG.14975' => 'ama', 'MSTRG.16175' => 'ama', 'MSTRG.23553' => 'ama', 'MSTRG.24304' => 'ama', 'MSTRG.25147' => 'ama', 'MSTRG.7437' => 'ama', 'Nitab4.5_0000110g0270' => 'nta', 'Nitab4.5_0000347g0190' => 'nta', 'Nitab4.5_0000355g0260' => 'nta', 'Nitab4.5_0000355g0270' => 'nta', 'Nitab4.5_0000444g0330' => 'nta', 'Nitab4.5_0000453g0020' => 'nta', 'Nitab4.5_0000628g0120' => 'nta', 'Nitab4.5_0000788g0010' => 'nta', 'Nitab4.5_0000790g0070' => 'nta', 'Nitab4.5_0001778g0100' => 'nta', 'Nitab4.5_0002458g0020' => 'nta', 'Nitab4.5_0003850g0050' => 'nta', 'Nitab4.5_0003932g0030' => 'nta', 'Nitab4.5_0004118g0050' => 'nta', 'Nitab4.5_0005314g0020' => 'nta', 'Nitab4.5_0005428g0070' => 'nta', 'Nitab4.5_0009293g0010' => 'nta', 'Nitab4.5_0012428g0020' => 'nta', 'Nn3g20241' => 'nnu', 'Nn3g21067' => 'nnu', 'Nn5g29512' => 'nnu', 'Oeu002844.2' => 'oeu', 'Oeu005369.2' => 'oeu', 'Oeu015182.1' => 'oeu', 'Oeu016736.2' => 'oeu', 'Oeu019075.2' => 'oeu', 'Oeu020420.1' => 'oeu', 'Oeu023597.1' => 'oeu', 'Oeu040929.1' => 'oeu', 'Oeu042431.1' => 'oeu', 'Oeu043655.1' => 'oeu', 'Oeu050671.3' => 'oeu', 'Oeu056189.1' => 'oeu', 'Os01g0176900' => 'osa', 'Os01g0203000' => 'osa', 'Os02g0233200' => 'osa', 'Os06g0552300' => 'osa', 'Os07g0580500' => 'osa', 'Peaxi162Scf00008g00459' => 'pax', 'Peaxi162Scf00057g00623' => 'pax', 'Peaxi162Scf00064g00329' => 'pax', 'Peaxi162Scf00111g01478' => 'pax', 'Peaxi162Scf00112g01217' => 'pax', 'Peaxi162Scf00264g00840' => 'pax', 'Peaxi162Scf01327g00017' => 'pax', 'PGR031G0008' => 'pgr', 'PGR031G2278' => 'pgr', 'PGR042G3128' => 'pgr', 'PGR083G0702' => 'pgr', 'PGR083G1285' => 'pgr', 'PGSC0003DMG400004501' => 'stu', 'PGSC0003DMG400007095' => 'stu', 'PGSC0003DMG400015424' => 'stu', 'PGSC0003DMG400027820' => 'stu', 'PGSC0003DMG400027849' => 'stu', 'PGSC0003DMG400028459' => 'stu', 'PGSC0003DMG400041163' => 'stu', 'Phvul.001G016050' => 'pvu', 'Phvul.001G016100' => 'pvu', 'Phvul.002G026700' => 'pvu', 'Phvul.002G026800' => 'pvu', 'Phvul.005G079400' => 'pvu', 'Phvul.009G056400' => 'pvu', 'Potri.001G372500' => 'ptr', 'Potri.001G386900' => 'ptr', 'Potri.002G133700' => 'ptr', 'Potri.003G026600' => 'ptr', 'Potri.004G062400' => 'ptr', 'Potri.005G126400' => 'ptr', 'Potri.007G030700' => 'ptr', 'Potri.011G071800' => 'ptr', 'Potri.011G106800' => 'ptr', 'Potri.014G041600' => 'ptr', 'Potri.016G125700' => 'ptr', 'Pp3c12_13650' => 'ppa', 'Pp3c20_1120' => 'ppa', 'Pp3c23_21930' => 'ppa', 'Pp3c4_6860' => 'ppa', 'Pp3c5_4880' => 'ppa', 'Pp3c6_22390' => 'ppa', 'Prupe.1G382900' => 'ppe', 'Prupe.4G068200' => 'ppe', 'Prupe.4G089900' => 'ppe', 'Prupe.4G158400' => 'ppe', 'Prupe.7G149000' => 'ppe', 'Psat2g161520' => 'psa', 'Psat5g017520' => 'psa', 'Psat5g234440' => 'psa', 'Psat5g235320' => 'psa', 'Psat6g006960' => 'psa', 'PSO170G3428' => 'pso', 'PSO541G2035' => 'pso', 'PSO541G4349' => 'pso', 'PSO675G0518' => 'pso', 'PSO700G0314' => 'pso', 'QL01p055543' => 'qlo', 'QL02p007547' => 'qlo', 'QL05p050238' => 'qlo', 'QL05p061041' => 'qlo', 'QL06p045048' => 'qlo', 'QL06p045110' => 'qlo', 'QL93p0155_0013' => 'qlo', 'RcHm_v2.0_Chr2g0102631' => 'rch', 'RcHm_v2.0_Chr5g0011971' => 'rch', 'RcHm_v2.0_Chr5g0015901' => 'rch', 'RcHm_v2.0_Chr5g0030041' => 'rch', 'RcHm_v2.0_Chr6g0300561' => 'rch', 'Rhsim02G0147500' => 'rsi', 'Rhsim05G0225300' => 'rsi', 'Rhsim08G0111800' => 'rsi', 'Rhsim13G0120400' => 'rsi', 'Sabra02G0104400' => 'sbr', 'Sabra05G0103900' => 'sbr', 'Sabra07G0026400' => 'sbr', 'Sabra11G0056200' => 'sbr', 'Sabra11G0059400' => 'sbr', 'Sabra11G0059500' => 'sbr', 'Sabra11G0095100' => 'sbr', 'Sabra16G0120000' => 'sbr', 'Sabra16G0245000' => 'sbr', 'Sabra16G0254400' => 'sbr', 'SalBow5G0756' => 'sbo', 'SalBow5G2120' => 'sbo', 'SalBow5G5661' => 'sbo', 'SalBow8G0948' => 'sbo', 'SalBow8G1683' => 'sbo', 'SalBow8G3037' => 'sbo', 'Sc02g0006430' => 'sci', 'Sc03g0010620' => 'sci', 'Sc05g0006800' => 'sci', 'Sc15g0006810' => 'sci', 'Sc16g0001460' => 'sci', 'Sed0001932' => 'sed', 'Sed0002528' => 'sed', 'Sed0002715' => 'sed', 'Sed0007551' => 'sed', 'Sed0012795' => 'sed', 'Sed0017665' => 'sed', 'Sed0024926' => 'sed', 'SEGI_14684' => 'sgi', 'SEGI_14781' => 'sgi', 'SEGI_19093' => 'sgi', 'SEGI_20199' => 'sgi', 'SEGI_21486' => 'sgi', 'SEGI_34681' => 'sgi', 'SEGI_36841' => 'sgi', 'SGA_v2.0_scaffold127G33995' => 'sas', 'SGA_v2.0_scaffold181G39755' => 'sas', 'SGA_v2.0_scaffold1G00099' => 'sas', 'SGA_v2.0_scaffold1G00241' => 'sas', 'SGA_v2.0_scaffold24G10257' => 'sas', 'SGA_v2.0_scaffold326G48701' => 'sas', 'SGA_v2.0_scaffold33G13418' => 'sas', 'SGA_v2.0_scaffold48G18054' => 'sas', 'SGA_v2.0_scaffold85G26689' => 'sas', 'SHI08207' => 'shi', 'SHI13443' => 'shi', 'SHI19297' => 'shi', 'SMO145G0160' => 'smo', 'SMO164G0054' => 'smo', 'SMO238G0037' => 'smo', 'SMO351G0386' => 'smo', 'SMO367G0909' => 'smo', 'Solyc02g063010.3' => 'sly', 'Solyc02g071990.3' => 'sly', 'Solyc03g005990.3' => 'sly', 'Solyc04g079980.3' => 'sly', 'Solyc07g062260.3' => 'sly', 'Solyc10g076390.2' => 'sly', 'Solyc12g089040.3' => 'sly', 'Sopen02g014060' => 'spe', 'Sopen02g020970' => 'spe', 'Sopen03g001990' => 'spe', 'Sopen04g033560' => 'spe', 'Sopen07g030540' => 'spe', 'Sopen10g028040' => 'spe', 'Sopen12g030940' => 'spe', 'Sp1g17260' => 'spa', 'Sp5g11490' => 'spa', 'Sp5g30210' => 'spa', 'Sp5g33760' => 'spa', 'Sp7g17600' => 'spa', 'Sp7g34440' => 'spa', 'SpUn0074_0070' => 'spa', 'SpUn0083_0030' => 'spa', 'TAR375G0443' => 'tar', 'TAR376G0944' => 'tar', 'TAR381G0621' => 'tar', 'TAR521G0004' => 'tar', 'TAR624G0919' => 'tar', 'TAR626G0414' => 'tar', 'TAR626G1155' => 'tar', 'TAR627G0206' => 'tar', 'TAR628G0677' => 'tar', 'TAR629G2121' => 'tar', 'THA.LOC104798442' => 'tha', 'THA.LOC104800369' => 'tha', 'THA.LOC104807552' => 'tha', 'THA.LOC104813843' => 'tha', 'THA.LOC104819805' => 'tha', 'THA.LOC104826875' => 'tha', 'THA.LOC104827531' => 'tha', 'Thecc.01G041300' => 'tca', 'Thecc.05G007700' => 'tca', 'Thecc.06G001200' => 'tca', 'Thecc.06G163900' => 'tca', 'Thecc.07G123200' => 'tca', 'Thecc.08G022800' => 'tca', 'Thhalv10008172m.g' => 'esa', 'Thhalv10010593m.g' => 'esa', 'Thhalv10018835m.g' => 'esa', 'Thhalv10018888m.g' => 'esa', 'Thhalv10025775m.g' => 'esa', 'Thhalv10025918m.g' => 'esa', 'TPR.G12342' => 'tpr', 'TPR.G12984' => 'tpr', 'TPR.G13129' => 'tpr', 'TPR.G15744' => 'tpr', 'TPR.G35865' => 'tpr', 'TWI09G1087' => 'twi', 'TWI09G1444' => 'twi', 'TWI39G0185' => 'twi', 'TWI53G0742' => 'twi', 'TWI56G1246' => 'twi', 'TWI73G0107' => 'twi', 'TWI73G0544' => 'twi', 'unitig_26.g10032' => 'ugi', 'unitig_26.g10086' => 'ugi', 'unitig_26.g8956' => 'ugi', 'unitig_26.g9829' => 'ugi', 'unitig_578.g16722' => 'ugi', 'unitig_736.g22554' => 'ugi', 'unitig_748.g7825' => 'ugi', 'unitig_749.g13706' => 'ugi', 'unitig_85.g27235' => 'ugi', 'unitig_899.g14503' => 'ugi', 'vmacro04509' => 'vma', 'vmacro11960' => 'vma', 'vmacro16055' => 'vma', 'vmacro17865' => 'vma', 'VMungo0647G1061' => 'vmu', 'VMungo0647G2032' => 'vmu', 'VMungo1080G1503' => 'vmu', 'VMungo1309G1595' => 'vmu', 'VMungo1309G2844' => 'vmu', 'Zm00001eb003120' => 'zma', 'Zm00001eb120750' => 'zma', 'Zm00001eb122520' => 'zma', 'Zm00001eb204870' => 'zma', 'Zm00001eb239100' => 'zma', 'Zm00001eb325550' => 'zma', 'Zm00001eb384820' => 'zma' ) $gf_id = 'HOM05D000817' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000817' ) $data_identifier = 'HOM05D000817' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 19, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 31, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 14, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 2, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 3, 'lsa' => (int) 9, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 4, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb384820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1